Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside abc transporter atp-binding protein | CLV88_101637 | Not Available | Positive | 652051 - 653604 | 56451.5 |
| nucleoside abc transporter membrane protein | CLV88_101638 | Not Available | Positive | 653597 - 654691 | 39254.9 |
| nucleoside abc transporter membrane protein | CLV88_101639 | Not Available | Positive | 654691 - 655659 | 34427.9 |
| hypothetical protein | CLV88_101640 | Not Available | Positive | 655748 - 656686 | 32967.4 |
| uncharacterized protein (tigr02186 family) | CLV88_101641 | Not Available | Positive | 656690 - 657451 | 27754.6 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | CLV88_101642 | Not Available | Negative | 657463 - 658191 | 25707.8 |
| exodeoxyribonuclease-5 | CLV88_101643 | Not Available | Negative | 658188 - 659717 | 56333.6 |
| acyl homoserine lactone synthase | CLV88_101644 | Not Available | Negative | 659760 - 660407 | 24002.3 |
| regulatory luxr family protein | CLV88_101645 | Not Available | Negative | 660489 - 661217 | 27410.4 |
| hypothetical protein | CLV88_101646 | Not Available | Negative | 661156 - 661371 | 7771.26 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
