Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tryptophanyl-trna synthetase | CLV88_101627 | Not Available | Positive | 644899 - 645936 | 38062.6 |
| branched-chain amino acid aminotransferase | CLV88_101628 | Not Available | Positive | 646320 - 647183 | 31854.9 |
| nucleotide-binding universal stress uspa family protein | CLV88_101629 | Not Available | Positive | 647251 - 647706 | 16772.4 |
| 2-hydroxychromene-2-carboxylate isomerase | CLV88_101630 | Not Available | Positive | 647710 - 648309 | 21906.2 |
| fe-s cluster biogenesis protein nfua | CLV88_101631 | Not Available | Positive | 648382 - 648945 | 19782.5 |
| hypothetical protein | CLV88_101632 | Not Available | Positive | 648935 - 649384 | 15990.6 |
| trna threonylcarbamoyl adenosine modification protein yeaz | CLV88_101633 | Not Available | Positive | 649374 - 650030 | 22543.1 |
| ribosomal-protein-alanine n-acetyltransferase | CLV88_101634 | Not Available | Positive | 650030 - 650449 | 15001.9 |
| nucleoside-binding protein | CLV88_101635 | Not Available | Positive | 650618 - 651622 | 34962.5 |
| snoal-like protein | CLV88_101636 | Not Available | Positive | 651698 - 652054 | 12717.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
