Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione s-transferase | CLV88_101617 | Not Available | Positive | 633223 - 634086 | 31856.6 |
| magnesium chelatase family protein | CLV88_101618 | Not Available | Positive | 634157 - 635671 | 53189.9 |
| glutathione synthase | CLV88_101619 | Not Available | Negative | 635672 - 636607 | 34846.6 |
| putative endonuclease | CLV88_101620 | Not Available | Negative | 636667 - 637044 | 13925.6 |
| 16s rrna (cytidine1402-2'-o)-methyltransferase | CLV88_101621 | Not Available | Negative | 637061 - 637921 | 30384.4 |
| amino acid/amide abc transporter substrate-binding protein (haat family) | CLV88_101622 | Not Available | Positive | 638015 - 639190 | 40133.9 |
| utp--glnb (protein pii) uridylyltransferase glnd | CLV88_101623 | Not Available | Positive | 639150 - 641960 | 107110.0 |
| putative peptidoglycan lipid ii flippase | CLV88_101624 | Not Available | Positive | 642011 - 643501 | 53094.0 |
| uncharacterized membrane protein hded (duf308 family) | CLV88_101625 | Not Available | Positive | 643600 - 644118 | 17606.6 |
| membrane associated rhomboid family serine protease | CLV88_101626 | Not Available | Negative | 644122 - 644808 | 24837.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
