Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphomannomutase/phosphoglucomutase | CLV88_101607 | Not Available | Positive | 623329 - 624825 | 54473.0 |
| peptidyl-dipeptidase dcp | CLV88_101608 | Not Available | Negative | 625012 - 627024 | 73177.0 |
| methionine-gamma-lyase | CLV88_101609 | Not Available | Positive | 627135 - 628124 | 34414.3 |
| cys/met metabolism plp-dependent enzyme | CLV88_101610 | Not Available | Positive | 628121 - 628342 | 8231.84 |
| molybdopterin/thiamine biosynthesis adenylyltransferase | CLV88_101611 | Not Available | Negative | 628383 - 629429 | 36793.0 |
| dutp pyrophosphatase | CLV88_101612 | Not Available | Negative | 629429 - 629965 | 18848.5 |
| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase | CLV88_101613 | Not Available | Negative | 629922 - 631115 | 41913.4 |
| putative iron-regulated protein | CLV88_101614 | Not Available | Negative | 631185 - 631997 | 28772.2 |
| adenosylcobinamide kinase /adenosylcobinamide-phosphate guanylyltransferase | CLV88_101615 | Not Available | Positive | 632068 - 632589 | 18333.1 |
| broad specificity phosphatase phoe | CLV88_101616 | Not Available | Positive | 632586 - 633164 | 21682.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
