Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell elongation-specific peptidoglycan biosynthesis regulator roda | CLV88_101597 | Not Available | Positive | 613395 - 614534 | 41631.2 |
| glyoxylate/hydroxypyruvate reductase a | CLV88_101598 | Not Available | Positive | 614701 - 615630 | 33618.6 |
| type iii secretion system (t3ss) sseb-like protein | CLV88_101599 | Not Available | Negative | 615678 - 616481 | 28258.5 |
| uracil-dna glycosylase | CLV88_101600 | Not Available | Negative | 616478 - 617113 | 23857.7 |
| arsr family transcriptional regulator | CLV88_101601 | Not Available | Positive | 617204 - 617548 | 12098.4 |
| hypothetical protein | CLV88_101602 | Not Available | Positive | 617541 - 618575 | 36193.0 |
| sodium/proton antiporter (nhaa family) | CLV88_101603 | Not Available | Positive | 618723 - 619970 | 45497.2 |
| capsular polysaccharide transport system atp-binding protein | CLV88_101604 | Not Available | Positive | 620154 - 620813 | 24814.0 |
| capsular polysaccharide transport system permease protein | CLV88_101605 | Not Available | Positive | 620791 - 622470 | 61217.0 |
| 2-dehydro-3-deoxyphosphooctonate aldolase (kdo 8-p synthase) | CLV88_101606 | Not Available | Positive | 622471 - 623304 | 29482.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
