Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-aminoethylphosphonate-pyruvate transaminase | CLV88_101577 | Not Available | Negative | 589932 - 591116 | 42881.8 |
| aminoethylphosphonate catabolism lysr family transcriptional regulator | CLV88_101578 | Not Available | Positive | 591236 - 592123 | 33398.3 |
| phosphate:na+ symporter | CLV88_101579 | Not Available | Negative | 592120 - 593784 | 59788.9 |
| histidinol phosphatase-like enzyme (inositol monophosphatase family) | CLV88_101580 | Not Available | Negative | 593788 - 594633 | 30387.0 |
| hypothetical protein | CLV88_101581 | Not Available | Negative | 594771 - 595475 | 25203.3 |
| uncharacterized protein duf1801 | CLV88_101582 | Not Available | Negative | 595544 - 595972 | 16059.3 |
| glyoxylase-like metal-dependent hydrolase (beta-lactamase superfamily ii) | CLV88_101583 | Not Available | Positive | 596087 - 597019 | 32866.2 |
| magnesium transporter | CLV88_101584 | Not Available | Negative | 597052 - 598416 | 48892.9 |
| nad+ synthase | CLV88_101585 | Not Available | Negative | 598638 - 600296 | 61133.1 |
| hypothetical protein | CLV88_101586 | Not Available | Positive | 600429 - 601850 | 50315.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
