Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_101567 | Not Available | Negative | 580306 - 580902 | 22283.7 |
| uncharacterized protein duf817 | CLV88_101568 | Not Available | Positive | 581114 - 581617 | 19143.6 |
| hypothetical protein | CLV88_101569 | Not Available | Negative | 581556 - 581930 | 13773.2 |
| pimeloyl-acp methyl ester carboxylesterase | CLV88_101570 | Not Available | Positive | 582007 - 582792 | 29188.8 |
| hypothetical protein | CLV88_101571 | Not Available | Negative | 582774 - 582962 | 6480.39 |
| glutamyl-trna synthetase | CLV88_101572 | Not Available | Negative | 583102 - 584496 | 51922.6 |
| d-3-phosphoglycerate dehydrogenase | CLV88_101573 | Not Available | Positive | 584594 - 585607 | 36223.1 |
| 4-aminobutyrate aminotransferase | CLV88_101574 | Not Available | Negative | 585722 - 587077 | 48126.9 |
| phosphonoacetaldehyde dehydrogenase | CLV88_101575 | Not Available | Negative | 587205 - 588650 | 52655.1 |
| phosphonoacetate hydrolase | CLV88_101576 | Not Available | Negative | 588665 - 589909 | 45471.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
