Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mannose-6-phosphate isomerase-like protein (cupin superfamily) | CLV88_101557 | Not Available | Negative | 566506 - 567615 | 41003.0 |
| malate dehydrogenase (oxaloacetate-decarboxylating)(nadp+) | CLV88_101558 | Not Available | Positive | 567756 - 570035 | 82153.0 |
| propionyl-coa synthetase | CLV88_101559 | Not Available | Positive | 570368 - 572260 | 68853.4 |
| dna-binding transcriptional lysr family regulator | CLV88_101560 | Not Available | Negative | 572372 - 573268 | 32041.8 |
| taurine dioxygenase | CLV88_101561 | Not Available | Positive | 573360 - 574184 | 30266.7 |
| threonine dehydratase | CLV88_101562 | Not Available | Positive | 574645 - 575859 | 42633.7 |
| nad+ kinase | CLV88_101563 | Not Available | Negative | 575878 - 576639 | 27373.9 |
| serine hydroxymethyltransferase | CLV88_101564 | Not Available | Positive | 576820 - 578112 | 45900.8 |
| hypothetical protein | CLV88_101565 | Not Available | Positive | 578365 - 579546 | 45573.4 |
| uncharacterized protein duf817 | CLV88_101566 | Not Available | Positive | 579634 - 580152 | 19292.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
