Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional merr regulator | CLV88_101537 | Not Available | Positive | 546325 - 546702 | 15108.1 |
| merr family transcriptional regulator | CLV88_101538 | Not Available | Positive | 546969 - 547370 | 16021.2 |
| hypothetical protein | CLV88_101539 | Not Available | Positive | 547400 - 549175 | 64111.6 |
| hypothetical protein | CLV88_101540 | Not Available | Positive | 549230 - 549442 | 8146.7 |
| glutathione s-transferase | CLV88_101541 | Not Available | Positive | 549759 - 550397 | 24035.1 |
| acetyl-coa c-acetyltransferase | CLV88_101542 | Not Available | Positive | 550425 - 551636 | 42809.2 |
| 3-hydroxyacyl-coa dehydrogenase/enoyl-coa hydratase/3-hydroxybutyryl-coa epimerase | CLV88_101543 | Not Available | Positive | 551648 - 553843 | 78768.3 |
| lysr family transcriptional regulator | CLV88_101544 | Not Available | Negative | 554016 - 554849 | 31032.8 |
| nadph2:quinone reductase | CLV88_101545 | Not Available | Positive | 554943 - 555935 | 34416.5 |
| hint domain-containing protein | CLV88_101546 | Not Available | Negative | 556201 - 556836 | 23355.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
