Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| (s)-ureidoglycine aminohydrolase | CLV88_101527 | Not Available | Negative | 538480 - 539301 | 30501.0 |
| putative sos response-associated peptidase yedk | CLV88_101528 | Not Available | Negative | 539438 - 540103 | 24663.2 |
| uncharacterized protein duf1992 | CLV88_101529 | Not Available | Negative | 540104 - 540409 | 11635.9 |
| 5'-nucleotidase | CLV88_101530 | Not Available | Negative | 540488 - 542047 | 54709.3 |
| uncharacterized protein (duf952 family) | CLV88_101531 | Not Available | Positive | 542160 - 542501 | 12343.6 |
| dihydroorotate oxidase a | CLV88_101532 | Not Available | Positive | 542498 - 543556 | 36622.0 |
| arsenate reductase | CLV88_101533 | Not Available | Positive | 543553 - 543891 | 12639.6 |
| mate family multidrug resistance protein | CLV88_101534 | Not Available | Negative | 543918 - 545261 | 47998.8 |
| acyl-coenzyme a thioesterase paai-like protein | CLV88_101535 | Not Available | Negative | 545254 - 545784 | 19583.4 |
| uncharacterized protein (tigr00369 family) | CLV88_101536 | Not Available | Negative | 545784 - 546206 | 14744.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
