Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator (chromosome initiation inhibitor) | CLV88_101517 | Not Available | Positive | 526155 - 527033 | 31839.2 |
| yebc/pmpr family dna-binding regulatory protein | CLV88_101518 | Not Available | Negative | 527164 - 527904 | 26901.1 |
| di/tricarboxylate transporter | CLV88_101519 | Not Available | Positive | 528057 - 529829 | 62188.9 |
| hypothetical protein | CLV88_101520 | Not Available | Negative | 529873 - 530043 | 6203.28 |
| malate dehydrogenase (oxaloacetate-decarboxylating)(nadp+) | CLV88_101521 | Not Available | Negative | 530393 - 532672 | 82744.3 |
| glyceraldehyde 3-phosphate dehydrogenase | CLV88_101522 | Not Available | Negative | 532706 - 533701 | 35743.0 |
| ornithine cyclodeaminase | CLV88_101523 | Not Available | Negative | 533777 - 534742 | 33919.5 |
| d-3-hydroxyaspartate aldolase | CLV88_101524 | Not Available | Negative | 534849 - 536033 | 42472.5 |
| threonine dehydratase | CLV88_101525 | Not Available | Negative | 536018 - 536971 | 34422.1 |
| serine-glyoxylate aminotransferase | CLV88_101526 | Not Available | Negative | 536986 - 538176 | 42229.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
