Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_101507 | Not Available | Positive | 516365 - 517765 | 51890.8 |
| hypothetical protein | CLV88_101508 | Not Available | Negative | 517829 - 517960 | 4635.55 |
| hypothetical protein | CLV88_101509 | Not Available | Negative | 517976 - 518215 | 9331.06 |
| choline dehydrogenase | CLV88_101510 | Not Available | Negative | 518325 - 519983 | 60168.2 |
| betaine aldehyde dehydrogenase | CLV88_101511 | Not Available | Negative | 520066 - 521517 | 51422.3 |
| tetr family transcriptional regulator | CLV88_101512 | Not Available | Positive | 521671 - 522255 | 22141.9 |
| putative membrane protein | CLV88_101513 | Not Available | Negative | 522303 - 523367 | 39449.3 |
| threonine/homoserine efflux transporter rhta | CLV88_101514 | Not Available | Negative | 523432 - 524292 | 30998.5 |
| hypothetical protein | CLV88_101515 | Not Available | Negative | 524418 - 525350 | 33977.1 |
| l-lysine exporter family protein lyse/argo | CLV88_101516 | Not Available | Negative | 525463 - 526065 | 21122.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
