Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_101467 | Not Available | Negative | 479333 - 479563 | 8055.36 |
| hypothetical protein | CLV88_101468 | Not Available | Negative | 479626 - 479844 | 8130.66 |
| transporter family-2 protein | CLV88_101469 | Not Available | Positive | 479915 - 480361 | 15022.8 |
| lipoprotein-releasing system atp-binding protein | CLV88_101470 | Not Available | Negative | 480358 - 481041 | 24096.1 |
| lipoprotein-releasing system permease protein | CLV88_101471 | Not Available | Negative | 481034 - 482311 | 46314.8 |
| hypothetical protein | CLV88_101472 | Not Available | Positive | 482458 - 482688 | 8226.84 |
| prolyl-trna synthetase | CLV88_101473 | Not Available | Negative | 482581 - 483918 | 50552.4 |
| putative purr-regulated permease perm | CLV88_101474 | Not Available | Positive | 484835 - 485902 | 38015.8 |
| dnaa protein | CLV88_101475 | Not Available | Positive | 485906 - 486571 | 23866.9 |
| polyphosphate kinase | CLV88_101476 | Not Available | Positive | 486706 - 488916 | 82706.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
