Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dimethylsulfoniopropionate lyase dddq | CLV88_101457 | Not Available | Positive | 471324 - 471914 | 21714.6 |
| l-alanine-dl-glutamate epimerase-like enolase superfamily enzyme | CLV88_101458 | Not Available | Positive | 471919 - 473031 | 40230.9 |
| cupin domain-containing protein | CLV88_101459 | Not Available | Positive | 473028 - 473315 | 10704.6 |
| l-alanine-dl-glutamate epimerase-like enolase superfamily enzyme | CLV88_101460 | Not Available | Positive | 473437 - 474549 | 39948.9 |
| l-alanine-dl-glutamate epimerase-like enolase superfamily enzyme | CLV88_101461 | Not Available | Positive | 474671 - 475774 | 38874.6 |
| glutamate-1-semialdehyde 2,1-aminomutase | CLV88_101462 | Not Available | Positive | 475779 - 477053 | 45626.4 |
| enamine deaminase rida (yjgf/yer057c/uk114 family) | CLV88_101463 | Not Available | Negative | 477116 - 477511 | 13949.0 |
| hth domain-containing protein | CLV88_101464 | Not Available | Positive | 477599 - 478312 | 26584.0 |
| cytochrome c | CLV88_101465 | Not Available | Negative | 478519 - 478923 | 13876.5 |
| cytochrome c | CLV88_101466 | Not Available | Negative | 478920 - 479315 | 13925.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
