Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| selenophosphate synthase | CLV88_101447 | Not Available | Negative | 459465 - 461639 | 75096.2 |
| 4-carboxymuconolactone decarboxylase | CLV88_101448 | Not Available | Negative | 461811 - 462200 | 14538.6 |
| aldehyde dehydrogenase (nad+) | CLV88_101449 | Not Available | Negative | 462225 - 463670 | 51172.6 |
| hypothetical protein | CLV88_101450 | Not Available | Negative | 463679 - 464419 | 28455.7 |
| hypothetical protein | CLV88_101451 | Not Available | Negative | 464412 - 465236 | 30660.3 |
| hypothetical protein | CLV88_101452 | Not Available | Negative | 465230 - 465643 | 15167.9 |
| phenylpropionate dioxygenase-like ring-hydroxylating dioxygenase large terminal subunit | CLV88_101453 | Not Available | Negative | 465647 - 466738 | 41042.1 |
| rpir family transcriptional regulator | CLV88_101454 | Not Available | Negative | 466735 - 467694 | 35230.6 |
| dimethylglycine dehydrogenase | CLV88_101455 | Not Available | Positive | 467750 - 470149 | 88890.1 |
| nadph:quinone reductase-like zn-dependent oxidoreductase | CLV88_101456 | Not Available | Positive | 470245 - 471327 | 38287.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
