Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_101437 | Not Available | Positive | 448102 - 449328 | 44598.3 |
| oxepin-coa hydrolase/3-oxo-5,6-dehydrosuberyl-coa semialdehyde dehydrogenase | CLV88_101438 | Not Available | Positive | 449339 - 451348 | 71356.2 |
| replicative dna helicase | CLV88_101439 | Not Available | Positive | 451624 - 453126 | 54800.2 |
| hypothetical protein | CLV88_101440 | Not Available | Positive | 453333 - 453968 | 22493.5 |
| putative metal-binding membrane protein | CLV88_101441 | Not Available | Positive | 453971 - 454783 | 28899.5 |
| pentapeptide repeat protein | CLV88_101442 | Not Available | Positive | 454843 - 455718 | 33002.7 |
| alanine racemase | CLV88_101443 | Not Available | Positive | 455763 - 456800 | 36491.3 |
| phospholipid/cholesterol/gamma-hch transport system permease protein | CLV88_101444 | Not Available | Positive | 456800 - 457582 | 26874.4 |
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | CLV88_101445 | Not Available | Positive | 457579 - 458325 | 26512.3 |
| trna 2-selenouridine synthase | CLV88_101446 | Not Available | Positive | 458444 - 459478 | 37733.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
