Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ring-1,2-phenylacetyl-coa epoxidase subunit paaa | CLV88_101427 | Not Available | Positive | 440638 - 441630 | 37766.8 |
| ring-1,2-phenylacetyl-coa epoxidase subunit paab | CLV88_101428 | Not Available | Positive | 441662 - 441946 | 10712.7 |
| ring-1,2-phenylacetyl-coa epoxidase subunit paac | CLV88_101429 | Not Available | Positive | 441946 - 442707 | 27993.1 |
| ring-1,2-phenylacetyl-coa epoxidase subunit paad | CLV88_101430 | Not Available | Positive | 442712 - 443173 | 17117.8 |
| ring-1,2-phenylacetyl-coa epoxidase subunit paae | CLV88_101431 | Not Available | Positive | 443256 - 444332 | 38784.0 |
| 1,2-phenylacetyl-coa epoxidase catalytic subunit | CLV88_101432 | Not Available | Positive | 444345 - 445109 | 28090.4 |
| hypothetical protein | CLV88_101433 | Not Available | Negative | 445133 - 445519 | 13261.6 |
| tetr family transcriptional regulator | CLV88_101434 | Not Available | Negative | 445626 - 446222 | 22214.8 |
| phenylacetate-coa ligase | CLV88_101435 | Not Available | Negative | 446226 - 447536 | 48433.2 |
| acyl-coa thioesterase | CLV88_101436 | Not Available | Negative | 447567 - 448004 | 15517.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
