Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phage integrase family protein | CLV88_1382 | Not Available | Negative | 4709854 - 4711542 | 62951.2 |
| excisionase family dna binding protein | CLV88_1383 | Not Available | Negative | 4711691 - 4711876 | 7225.7 |
| hypothetical protein | CLV88_1384 | Not Available | Negative | 4712136 - 4712822 | 25861.8 |
| hypothetical protein | CLV88_1385 | Not Available | Negative | 4712995 - 4713297 | 11468.1 |
| hypothetical protein | CLV88_1386 | Not Available | Negative | 4713362 - 4713476 | 4204.9 |
| hypothetical protein | CLV88_1391 | Not Available | Positive | 4714016 - 4715470 | 52974.0 |
| hint domain-containing protein | CLV88_1392 | Not Available | Positive | 4715463 - 4717886 | 83990.5 |
| hypothetical protein | CLV88_1401 | Not Available | Negative | 4718363 - 4718491 | 4581.71 |
| Trna-ser | Not Available | Not Available | Positive | 4718536 - 4718625 | Not Available |
| arylsulfatase | CLV88_1403 | Not Available | Positive | 4719012 - 4720688 | 62670.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
