Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| osmc-like protein | CLV88_1368 | Not Available | Positive | 4699964 - 4700482 | 18588.1 |
| ubiquinone/menaquinone biosynthesis c-methylase ubie | CLV88_1369 | Not Available | Positive | 4700482 - 4701309 | 30017.3 |
| hypothetical protein | CLV88_13610 | Not Available | Negative | 4701490 - 4701702 | 7417.19 |
| integrase | CLV88_13611 | Not Available | Negative | 4701699 - 4702931 | 46038.7 |
| carbohydrate abc transporter membrane protein 2 (cut1 family) | CLV88_1371 | Not Available | Negative | 4703331 - 4704179 | 31474.1 |
| carbohydrate abc transporter membrane protein 1 (cut1 family) | CLV88_1372 | Not Available | Negative | 4704181 - 4705107 | 35287.2 |
| carbohydrate abc transporter substrate-binding protein (cut1 family) | CLV88_1373 | Not Available | Negative | 4705248 - 4706531 | 47467.6 |
| iclr family transcriptional regulator | CLV88_1374 | Not Available | Positive | 4706820 - 4707614 | 29160.7 |
| carbohydrate abc transporter atp-binding protein (cut1 family) | CLV88_1375 | Not Available | Positive | 4707611 - 4708669 | 38583.7 |
| site-specific recombinase xerc | CLV88_1381 | Not Available | Negative | 4708784 - 4709857 | 40455.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
