Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ala | Not Available | Not Available | Positive | 4692971 - 4693046 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 4693153 - 4693229 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 4697028 - 4697104 | Not Available |
| hypothetical protein | CLV88_1361 | Not Available | Positive | 4697295 - 4697489 | 7173.33 |
| hypothetical protein | CLV88_1362 | Not Available | Positive | 4697486 - 4697638 | 5542.49 |
| hypothetical protein | CLV88_1363 | Not Available | Positive | 4697645 - 4697836 | 7164.81 |
| putative nad(p)-binding protein | CLV88_1364 | Not Available | Positive | 4698015 - 4698476 | 16494.5 |
| hypothetical protein | CLV88_1365 | Not Available | Positive | 4698514 - 4698615 | 3714.71 |
| hxlr family transcriptional regulator | CLV88_1366 | Not Available | Negative | 4698807 - 4699526 | 27022.6 |
| 4-oxalocrotonate tautomerase | CLV88_1367 | Not Available | Positive | 4699677 - 4699892 | 7899.55 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
