Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative spermidine/putrescine transport system permease protein | CLV88_1336 | Not Available | Positive | 4671812 - 4672615 | 28831.8 |
| iclr family transcriptional regulator | CLV88_1337 | Not Available | Negative | 4672624 - 4673331 | 25128.1 |
| arginase family enzyme | CLV88_1338 | Not Available | Positive | 4673417 - 4674187 | 26725.2 |
| hypothetical protein | CLV88_1339 | Not Available | Positive | 4674180 - 4674854 | 23271.0 |
| agmatinase | CLV88_13310 | Not Available | Positive | 4674854 - 4675729 | 31124.1 |
| agmatinase | CLV88_13311 | Not Available | Positive | 4675726 - 4676736 | 35999.5 |
| hypothetical protein | CLV88_13312 | Not Available | Positive | 4676736 - 4677428 | 25508.5 |
| aldehyde dehydrogenase (nad+) | CLV88_13313 | Not Available | Positive | 4677425 - 4678870 | 50694.2 |
| formyl-coa transferase | CLV88_13314 | Not Available | Positive | 4678871 - 4680067 | 42490.9 |
| citrate synthase | CLV88_13315 | Not Available | Positive | 4680064 - 4680891 | 29462.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
