Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein duf4242 | CLV88_13210 | Not Available | Positive | 4663410 - 4663994 | 20707.6 |
| hypothetical protein | CLV88_13211 | Not Available | Negative | 4664437 - 4664826 | 13498.8 |
| quercetin dioxygenase-like cupin family protein | CLV88_13212 | Not Available | Negative | 4664823 - 4665287 | 16774.9 |
| dna-binding transcriptional lysr family regulator | CLV88_13213 | Not Available | Positive | 4665399 - 4666352 | 35608.8 |
| hypothetical protein | CLV88_13214 | Not Available | Negative | 4666437 - 4666789 | 12597.4 |
| recombinase | CLV88_1331 | Not Available | Negative | 4666790 - 4667001 | 7823.45 |
| hypothetical protein | CLV88_1332 | Not Available | Negative | 4667101 - 4667838 | 27266.5 |
| putative spermidine/putrescine transport system substrate-binding protein | CLV88_1333 | Not Available | Positive | 4668698 - 4669753 | 37916.6 |
| putative spermidine/putrescine transport system atp-binding protein | CLV88_1334 | Not Available | Positive | 4669814 - 4670902 | 39293.4 |
| putative spermidine/putrescine transport system permease protein | CLV88_1335 | Not Available | Positive | 4670899 - 4671801 | 33172.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
