Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative tim-barrel fold metal-dependent hydrolase | CLV88_13115 | Not Available | Positive | 4650557 - 4651402 | 31347.1 |
| hypothetical protein | CLV88_1321 | Not Available | Negative | 4652026 - 4652265 | 8874.47 |
| formate/nitrite transporter | CLV88_1322 | Not Available | Negative | 4652655 - 4653440 | 27106.6 |
| hsp20 family protein | CLV88_1323 | Not Available | Positive | 4653785 - 4654216 | 16010.8 |
| hypothetical protein | CLV88_1324 | Not Available | Positive | 4654592 - 4654984 | 14080.9 |
| amino acid/polyamine/organocation transporter (apc superfamily) | CLV88_1325 | Not Available | Positive | 4655006 - 4656226 | 42218.7 |
| bt1 family protein | CLV88_1326 | Not Available | Positive | 4656254 - 4657870 | 58865.6 |
| trypsin-like peptidase | CLV88_1327 | Not Available | Negative | 4657878 - 4659470 | 57542.6 |
| vit1/ccc1 family predicted fe2+/mn2+ transporter | CLV88_1328 | Not Available | Positive | 4659675 - 4660385 | 25209.5 |
| tolb-like protein | CLV88_1329 | Not Available | Negative | 4661012 - 4663171 | 79633.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
