Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tcta family transporter | CLV88_1315 | Not Available | Positive | 4638888 - 4640861 | 70062.8 |
| 2-methylcitrate dehydratase prpd | CLV88_1316 | Not Available | Positive | 4640871 - 4642286 | 50388.4 |
| 2-methylcitrate dehydratase prpd | CLV88_1317 | Not Available | Positive | 4642286 - 4643668 | 47997.3 |
| universal stress protein family protein | CLV88_1318 | Not Available | Positive | 4643674 - 4644528 | 30869.1 |
| hypothetical protein | CLV88_1319 | Not Available | Positive | 4644549 - 4645289 | 26108.9 |
| hypothetical protein | CLV88_13110 | Not Available | Negative | 4645286 - 4645525 | 8601.46 |
| 3-oxoadipate enol-lactonase | CLV88_13111 | Not Available | Negative | 4645716 - 4646537 | 30881.4 |
| tcta family transporter | CLV88_13112 | Not Available | Negative | 4646562 - 4648556 | 69396.4 |
| tripartite-type tricarboxylate transporter receptor subunit tctc | CLV88_13113 | Not Available | Negative | 4648633 - 4649730 | 39098.0 |
| gntr family transcriptional regulator | CLV88_13114 | Not Available | Negative | 4649756 - 4650493 | 27850.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
