Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| autotransporter secretion inner membrane protein tamb | CLV88_1303 | Not Available | Positive | 4618272 - 4621685 | 119215.0 |
| putative hydroxymethylpyrimidine transport system permease protein | CLV88_1304 | Not Available | Negative | 4621733 - 4622473 | 26123.1 |
| thiaminase/transcriptional activator tena | CLV88_1305 | Not Available | Negative | 4622470 - 4623123 | 24410.7 |
| putative hydroxymethylpyrimidine transport system atp-binding protein | CLV88_1306 | Not Available | Negative | 4623120 - 4623839 | 25612.1 |
| thiaminase/transcriptional activator tena | CLV88_1307 | Not Available | Negative | 4623839 - 4624510 | 24731.2 |
| putative hydroxymethylpyrimidine transport system substrate-binding protein | CLV88_1308 | Not Available | Negative | 4624507 - 4625442 | 33812.5 |
| molybdopterin/thiamine biosynthesis adenylyltransferase | CLV88_1309 | Not Available | Negative | 4625452 - 4626408 | 33402.7 |
| thiamine-phosphate diphosphorylase | CLV88_13010 | Not Available | Negative | 4626405 - 4627001 | 22175.8 |
| thiazole-phosphate synthase | CLV88_13011 | Not Available | Negative | 4626998 - 4627768 | 26842.2 |
| sulfur carrier protein | CLV88_13012 | Not Available | Negative | 4627770 - 4627967 | 6730.04 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
