Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lsu ribosomal protein l12p | CLV88_1299 | Not Available | Negative | 4607765 - 4608142 | 12776.4 |
| lsu ribosomal protein l10p | CLV88_12910 | Not Available | Negative | 4608214 - 4608732 | 17732.3 |
| galactose mutarotase-like enzyme | CLV88_12911 | Not Available | Positive | 4609238 - 4610110 | 31642.6 |
| lsu ribosomal protein l1p | CLV88_12912 | Not Available | Negative | 4610167 - 4610865 | 23925.1 |
| lsu ribosomal protein l11p | CLV88_12913 | Not Available | Negative | 4610865 - 4611290 | 14970.3 |
| transcription antitermination protein nusg | CLV88_12914 | Not Available | Negative | 4612206 - 4612739 | 20159.1 |
| protein translocase subunit sece/sec61 gamma | CLV88_12915 | Not Available | Negative | 4612952 - 4613149 | 7183.1 |
| hypothetical protein | CLV88_12916 | Not Available | Negative | 4613223 - 4613888 | 24596.7 |
| chemotaxis protein motb | CLV88_1301 | Not Available | Negative | 4615353 - 4616177 | 30233.2 |
| autotransporter secretion outer membrane protein tama | CLV88_1302 | Not Available | Positive | 4616467 - 4618272 | 65072.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
