Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_12826 | Not Available | Negative | 4591592 - 4591990 | 14323.0 |
| hypothetical protein | CLV88_12827 | Not Available | Negative | 4592291 - 4592935 | 23748.5 |
| elongation factor tu-like protein | CLV88_1291 | Not Available | Negative | 4593714 - 4593808 | 3379.06 |
| translation elongation factor 2 (ef-2/ef-g) | CLV88_1292 | Not Available | Negative | 4593895 - 4596012 | 77825.9 |
| ssu ribosomal protein s7p | CLV88_1293 | Not Available | Negative | 4596034 - 4596504 | 17942.6 |
| ssu ribosomal protein s12p | CLV88_1294 | Not Available | Negative | 4596520 - 4596891 | 14180.5 |
| putative rhamnosyltransferase | CLV88_1295 | Not Available | Positive | 4597226 - 4598044 | 31067.4 |
| s-adenosylmethionine uptake transporter | CLV88_1296 | Not Available | Negative | 4598020 - 4598907 | 31914.1 |
| dna-directed rna polymerase subunit beta' | CLV88_1297 | Not Available | Negative | 4599056 - 4603303 | 156965.0 |
| dna-directed rna polymerase subunit beta | CLV88_1298 | Not Available | Negative | 4603375 - 4607511 | 153330.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
