Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease z | CLV88_1286 | Not Available | Positive | 4573626 - 4574759 | 41700.4 |
| ribonuclease z | CLV88_1287 | Not Available | Positive | 4574868 - 4576163 | 47439.8 |
| hypothetical protein | CLV88_1288 | Not Available | Positive | 4576341 - 4577081 | 26744.9 |
| hypothetical protein | CLV88_1289 | Not Available | Positive | 4577081 - 4578934 | 68137.6 |
| hupe/urej protein | CLV88_12810 | Not Available | Positive | 4578939 - 4580246 | 47053.4 |
| hypothetical protein | CLV88_12811 | Not Available | Positive | 4580699 - 4581040 | 11854.7 |
| cytochrome c | CLV88_12812 | Not Available | Positive | 4581138 - 4581569 | 15083.1 |
| hypothetical protein | CLV88_12813 | Not Available | Positive | 4581580 - 4581921 | 12311.5 |
| putative copper resistance protein d | CLV88_12814 | Not Available | Positive | 4581924 - 4582790 | 30066.1 |
| ftsp/cota-like multicopper oxidase with cupredoxin domain | CLV88_12815 | Not Available | Positive | 4582799 - 4584118 | 48525.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
