Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function (duf2924) | CLV88_12722 | Not Available | Positive | 4564986 - 4565399 | 15533.8 |
| dna invertase pin-like site-specific dna recombinase | CLV88_12723 | Not Available | Positive | 4565399 - 4567027 | 60568.8 |
| Trna-trp | Not Available | Not Available | Positive | 4567201 - 4567276 | Not Available |
| hypothetical protein | CLV88_12725 | Not Available | Positive | 4567416 - 4568114 | 25913.4 |
| hypothetical protein | CLV88_12726 | Not Available | Positive | 4568189 - 4568267 | 2949.52 |
| hypothetical protein | CLV88_1281 | Not Available | Positive | 4568300 - 4568767 | 17178.3 |
| site-specific recombinase xerd | CLV88_1282 | Not Available | Negative | 4568922 - 4570325 | 51364.2 |
| hypothetical protein | CLV88_1283 | Not Available | Negative | 4570924 - 4571244 | 10938.1 |
| hypothetical protein | CLV88_1284 | Not Available | Negative | 4571537 - 4571917 | 14126.5 |
| hypothetical protein | CLV88_1285 | Not Available | Negative | 4571945 - 4573213 | 46443.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
