Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative homoserine dehydrogenase-like protein | CLV88_12712 | Not Available | Positive | 4554693 - 4556033 | 47789.2 |
| choline dehydrogenase | CLV88_12713 | Not Available | Positive | 4556030 - 4557667 | 59336.1 |
| aldehyde dehydrogenase (nad+) | CLV88_12714 | Not Available | Positive | 4557692 - 4559170 | 53381.7 |
| threonine/homoserine/homoserine lactone efflux protein | CLV88_12715 | Not Available | Negative | 4559185 - 4559775 | 21046.5 |
| tripartite atp-independent transporter dctm subunit | CLV88_12716 | Not Available | Negative | 4559847 - 4561313 | 52065.1 |
| trap-type mannitol/chloroaromatic compound transport system permease small subunit | CLV88_12717 | Not Available | Negative | 4561313 - 4561876 | 20698.9 |
| trap-type mannitol/chloroaromatic compound transport system substrate-binding protein | CLV88_12718 | Not Available | Negative | 4561962 - 4563002 | 37771.8 |
| dna-binding transcriptional lysr family regulator | CLV88_12719 | Not Available | Negative | 4563126 - 4564025 | 32593.2 |
| hypothetical protein | CLV88_12720 | Not Available | Positive | 4564383 - 4564637 | 9376.59 |
| uncharacterized protein duf3489 | CLV88_12721 | Not Available | Positive | 4564727 - 4564981 | 9266.12 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
