Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| microsomal dipeptidase-like zn-dependent dipeptidase | CLV88_12617 | Not Available | Negative | 4531703 - 4532689 | 37235.8 |
| aldehyde dehydrogenase (nad+) | CLV88_12618 | Not Available | Negative | 4532727 - 4534175 | 51239.9 |
| dna-binding transcriptional lysr family regulator | CLV88_12619 | Not Available | Positive | 4534280 - 4535164 | 31866.5 |
| lysr family transcriptional regulator | CLV88_12620 | Not Available | Positive | 4535180 - 4536202 | 37977.4 |
| phenylpropionate dioxygenase-like ring-hydroxylating dioxygenase large terminal subunit | CLV88_12621 | Not Available | Positive | 4536303 - 4537457 | 43595.2 |
| aldehyde dehydrogenase (nad+) | CLV88_12622 | Not Available | Positive | 4537466 - 4538905 | 50529.8 |
| hypothetical protein | CLV88_12623 | Not Available | Positive | 4538908 - 4539147 | 9056.78 |
| dimethylglycine dehydrogenase | CLV88_12624 | Not Available | Positive | 4539386 - 4541806 | 89140.0 |
| hypothetical protein | CLV88_12625 | Not Available | Positive | 4541819 - 4542023 | 7475.89 |
| hypothetical protein | CLV88_1271 | Not Available | Positive | 4542024 - 4542394 | 13750.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
