Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-sialoglycoprotein endopeptidase | CLV88_1267 | Not Available | Negative | 4518132 - 4519241 | 38315.2 |
| uroporphyrinogen-iii synthase | CLV88_1268 | Not Available | Positive | 4519329 - 4520030 | 24602.7 |
| hypothetical protein | CLV88_1269 | Not Available | Positive | 4520110 - 4521429 | 45657.4 |
| hemy protein | CLV88_12610 | Not Available | Positive | 4521440 - 4522918 | 53838.5 |
| asma-like protein | CLV88_12611 | Not Available | Negative | 4522931 - 4525678 | 99571.1 |
| mechanosensitive ion channel-like protein | CLV88_12612 | Not Available | Negative | 4525701 - 4527359 | 61238.3 |
| hypothetical protein | CLV88_12613 | Not Available | Positive | 4527537 - 4528025 | 17132.1 |
| surface antigen-like protein | CLV88_12614 | Not Available | Negative | 4528049 - 4529176 | 39197.0 |
| uncharacterized protein duf3726 | CLV88_12615 | Not Available | Negative | 4529301 - 4529951 | 22735.1 |
| hypothetical protein | CLV88_12616 | Not Available | Negative | 4529948 - 4531639 | 63625.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
