Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite atp-independent transporter dctm subunit | CLV88_12534 | Not Available | Positive | 4510042 - 4511352 | 45855.4 |
| 3-oxoacyl-[acyl-carrier protein] reductase | CLV88_12535 | Not Available | Positive | 4511451 - 4512194 | 25373.6 |
| d-mannonate dehydratase | CLV88_12536 | Not Available | Positive | 4512437 - 4513633 | 43924.5 |
| hypothetical protein | CLV88_12537 | Not Available | Negative | 4513853 - 4514044 | 7183.7 |
| hypothetical protein | CLV88_1261 | Not Available | Positive | 4514557 - 4515038 | 17462.2 |
| uncharacterized protein duf2853 | CLV88_1262 | Not Available | Positive | 4515473 - 4515814 | 12425.8 |
| uncharacterized protein duf1761 | CLV88_1263 | Not Available | Negative | 4516041 - 4516436 | 13794.2 |
| putative rna-binding protein with pua-like domain | CLV88_1264 | Not Available | Negative | 4516484 - 4516903 | 15958.0 |
| hypothetical protein | CLV88_1265 | Not Available | Negative | 4516903 - 4517178 | 9778.67 |
| glycerol-3-phosphate dehydrogenase (nad(p)+) | CLV88_1266 | Not Available | Negative | 4517182 - 4518135 | 32836.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
