Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| choline-sulfatase | CLV88_101407 | Not Available | Negative | 415127 - 416659 | 57764.9 |
| hypothetical protein | CLV88_101408 | Not Available | Positive | 416917 - 417960 | 37926.1 |
| hypothetical protein | CLV88_101409 | Not Available | Positive | 417986 - 418501 | 18414.2 |
| urocanase | CLV88_101410 | Not Available | Negative | 419116 - 419256 | 5007.81 |
| iclr family transcriptional regulator | CLV88_101411 | Not Available | Positive | 420382 - 421188 | 30295.7 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_101412 | Not Available | Negative | 421173 - 421937 | 26844.3 |
| hypothetical protein | CLV88_101413 | Not Available | Negative | 422000 - 422977 | 35105.7 |
| trap transporter 4tm/12tm fusion protein | CLV88_101414 | Not Available | Negative | 423036 - 425120 | 74261.5 |
| putative sulfatase | CLV88_101415 | Not Available | Negative | 425117 - 426376 | 44462.0 |
| arylsulfatase a-like enzyme | CLV88_101416 | Not Available | Negative | 426376 - 428049 | 63067.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
