Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylglyoxal synthase | CLV88_12524 | Not Available | Positive | 4501668 - 4502072 | 14535.5 |
| dna-binding gntr family transcriptional regulator | CLV88_12525 | Not Available | Negative | 4502124 - 4502798 | 24851.8 |
| tripartite atp-independent transporter dctp family solute receptor | CLV88_12526 | Not Available | Positive | 4502926 - 4503924 | 36076.7 |
| trap-type c4-dicarboxylate transport system permease small subunit | CLV88_12527 | Not Available | Positive | 4503990 - 4504472 | 17963.7 |
| c4-dicarboxylate transporter dctm subunit | CLV88_12528 | Not Available | Positive | 4504482 - 4505765 | 44786.0 |
| l-lactate dehydrogenase (cytochrome) | CLV88_12529 | Not Available | Positive | 4505857 - 4506999 | 42429.5 |
| integrase-like protein | CLV88_12530 | Not Available | Positive | 4507067 - 4507288 | 8035.6 |
| gntr family transcriptional regulator | CLV88_12531 | Not Available | Negative | 4507455 - 4508135 | 25717.6 |
| tripartite atp-independent transporter dctp family solute receptor | CLV88_12532 | Not Available | Positive | 4508475 - 4509458 | 35308.2 |
| trap-type c4-dicarboxylate transport system permease small subunit | CLV88_12533 | Not Available | Positive | 4509551 - 4510045 | 18236.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
