Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose transport system atp-binding protein | CLV88_12514 | Not Available | Positive | 4493345 - 4494871 | 54435.5 |
| ribose transport system permease protein | CLV88_12515 | Not Available | Positive | 4494868 - 4495887 | 35119.2 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_12516 | Not Available | Positive | 4495890 - 4496678 | 27749.3 |
| lactoylglutathione lyase family protein | CLV88_12517 | Not Available | Positive | 4496707 - 4497201 | 18913.4 |
| d-3-phosphoglycerate dehydrogenase | CLV88_12518 | Not Available | Positive | 4497194 - 4498228 | 37377.5 |
| 4-hydroxy-4-methyl-2-oxoglutarate aldolase | CLV88_12519 | Not Available | Positive | 4498238 - 4498927 | 24964.8 |
| 2-keto-3-deoxygalactonate kinase | CLV88_12520 | Not Available | Positive | 4498908 - 4499825 | 32357.6 |
| 2-keto-3-deoxy-phosphogalactonate aldolase | CLV88_12521 | Not Available | Positive | 4499822 - 4500454 | 22143.7 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_12522 | Not Available | Positive | 4500451 - 4501155 | 24493.5 |
| quercetin dioxygenase-like cupin family protein | CLV88_12523 | Not Available | Positive | 4501166 - 4501690 | 20091.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
