Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| monosaccharide abc transporter atp-binding protein (cut2 family) | CLV88_1254 | Not Available | Negative | 4482026 - 4483645 | 58345.2 |
| monosaccharide abc transporter substrate-binding protein (cut2 family) | CLV88_1255 | Not Available | Negative | 4483649 - 4484773 | 40242.2 |
| nucleoside-diphosphate-sugar epimerase | CLV88_1256 | Not Available | Negative | 4485020 - 4485829 | 29881.3 |
| hypothetical protein | CLV88_1257 | Not Available | Negative | 4485817 - 4486728 | 33686.9 |
| monosaccharide abc transporter substrate-binding protein (cut2 family) | CLV88_1258 | Not Available | Negative | 4486780 - 4487775 | 35259.3 |
| monosaccharide abc transporter membrane protein (cut2 family) | CLV88_1259 | Not Available | Negative | 4487819 - 4488811 | 34520.1 |
| monosaccharide abc transporter atp-binding protein (cut2 family) | CLV88_12510 | Not Available | Negative | 4488808 - 4490382 | 56661.9 |
| gntr family transcriptional regulator | CLV88_12511 | Not Available | Negative | 4490555 - 4491223 | 24761.5 |
| l-arabinonolactonase | CLV88_12512 | Not Available | Positive | 4491328 - 4492197 | 31617.9 |
| ribose transport system substrate-binding protein | CLV88_12513 | Not Available | Positive | 4492221 - 4493255 | 36328.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
