Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sorbitol abc transporter atp-binding protein /mannitol abc transporter atp-binding protein | CLV88_12430 | Not Available | Negative | 4471583 - 4472587 | 36515.1 |
| sorbitol abc transporter membrane protein /mannitol abc transporter membrane protein | CLV88_12431 | Not Available | Negative | 4472599 - 4473429 | 30374.1 |
| sorbitol abc transporter membrane protein /mannitol abc transporter membrane protein | CLV88_12432 | Not Available | Negative | 4473440 - 4474306 | 31608.8 |
| sorbitol-binding protein /mannitol-binding protein | CLV88_12433 | Not Available | Negative | 4474425 - 4475729 | 46751.6 |
| dna-binding laci/purr family transcriptional regulator | CLV88_12434 | Not Available | Negative | 4475850 - 4476881 | 37807.9 |
| hypothetical protein | CLV88_12435 | Not Available | Negative | 4477116 - 4477547 | 16084.5 |
| flhb/hrpn/yscu/spas family protein | CLV88_12436 | Not Available | Negative | 4477544 - 4478010 | 17021.4 |
| hypothetical protein | CLV88_1251 | Not Available | Positive | 4478417 - 4478686 | 10035.1 |
| 6-phosphogluconolactonase | CLV88_1252 | Not Available | Positive | 4478754 - 4479941 | 42232.8 |
| ribose transport system permease protein | CLV88_1253 | Not Available | Negative | 4479981 - 4482029 | 70555.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
