Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein duf4392 | CLV88_12420 | Not Available | Positive | 4458900 - 4459913 | 35367.5 |
| selenocysteine lyase/cysteine desulfurase | CLV88_12421 | Not Available | Positive | 4459932 - 4461197 | 45250.6 |
| gntr family transcriptional regulator | CLV88_12422 | Not Available | Negative | 4461270 - 4462067 | 29563.2 |
| trap-type mannitol/chloroaromatic compound transport system substrate-binding protein | CLV88_12423 | Not Available | Positive | 4462383 - 4463432 | 38012.7 |
| tripartite atp-independent transporter dctm subunit | CLV88_12424 | Not Available | Positive | 4463557 - 4465617 | 74261.0 |
| l-lactate dehydrogenase (cytochrome) | CLV88_12425 | Not Available | Positive | 4465632 - 4466816 | 43229.2 |
| d-lactate dehydrogenase | CLV88_12426 | Not Available | Positive | 4466813 - 4468540 | 63550.1 |
| pantothenate kinase | CLV88_12427 | Not Available | Negative | 4468527 - 4469165 | 23488.2 |
| mannitol 2-dehydrogenase | CLV88_12428 | Not Available | Negative | 4469314 - 4470786 | 54003.9 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_12429 | Not Available | Negative | 4470813 - 4471586 | 26626.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
