Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine hydroxymethyltransferase | CLV88_12410 | Not Available | Negative | 4443677 - 4444942 | 44416.3 |
| xre family transcriptional regulator | CLV88_12411 | Not Available | Positive | 4445073 - 4445675 | 22278.2 |
| trimethylamine--corrinoid protein co-methyltransferase | CLV88_12412 | Not Available | Positive | 4445813 - 4447321 | 53172.3 |
| dimethylglycine dehydrogenase | CLV88_12413 | Not Available | Positive | 4447325 - 4449742 | 88589.8 |
| 4-methylaminobutanoate oxidase (formaldehyde-forming) | CLV88_12414 | Not Available | Positive | 4449745 - 4452162 | 88167.4 |
| arylsulfatase a-like enzyme | CLV88_12415 | Not Available | Positive | 4452167 - 4453642 | 55369.9 |
| lysr family transcriptional regulator | CLV88_12416 | Not Available | Negative | 4453635 - 4454561 | 34566.6 |
| 4-aminobutyrate--pyruvate transaminase | CLV88_12417 | Not Available | Positive | 4454666 - 4456042 | 50622.6 |
| acyl-coa reductase-like nad-dependent aldehyde dehydrogenase | CLV88_12418 | Not Available | Positive | 4456150 - 4457640 | 52452.4 |
| l-seryl-trna(ser) seleniumtransferase | CLV88_12419 | Not Available | Positive | 4457637 - 4458899 | 43376.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
