Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phage integrase family protein | CLV88_12344 | Not Available | Positive | 4431025 - 4432026 | 38061.8 |
| formylglycine-generating enzyme required for sulfatase activity | CLV88_1241 | Not Available | Negative | 4432259 - 4433260 | 37616.4 |
| l-serine dehydratase | CLV88_1242 | Not Available | Negative | 4433584 - 4434999 | 49407.7 |
| glycine dehydrogenase | CLV88_1243 | Not Available | Negative | 4435059 - 4437917 | 103338.0 |
| glycine cleavage system h protein | CLV88_1244 | Not Available | Negative | 4437929 - 4438294 | 13174.1 |
| aminomethyltransferase | CLV88_1245 | Not Available | Negative | 4438311 - 4439411 | 39545.2 |
| universal stress protein f | CLV88_1246 | Not Available | Negative | 4439441 - 4439854 | 15110.3 |
| agcs family alanine or glycine:cation symporter | CLV88_1247 | Not Available | Negative | 4439926 - 4441299 | 47164.4 |
| lipoic acid synthetase | CLV88_1248 | Not Available | Negative | 4441326 - 4442270 | 35141.9 |
| dihydrolipoamide dehydrogenase | CLV88_1249 | Not Available | Negative | 4442284 - 4443666 | 47514.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
