Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_1234 | Not Available | Positive | 4380924 - 4382852 | 71013.8 |
| hypothetical protein | CLV88_1235 | Not Available | Positive | 4382852 - 4384858 | 74720.7 |
| hypothetical protein | CLV88_1236 | Not Available | Positive | 4384858 - 4386357 | 57414.1 |
| hypothetical protein | CLV88_1237 | Not Available | Positive | 4386354 - 4388690 | 85919.4 |
| hypothetical protein | CLV88_1238 | Not Available | Positive | 4388836 - 4389036 | 7496.07 |
| dna polymerase-3 subunit epsilon | CLV88_1239 | Not Available | Negative | 4389103 - 4390098 | 35924.7 |
| peptidase m48-like protein | CLV88_12310 | Not Available | Negative | 4390100 - 4390939 | 30405.1 |
| hypothetical protein | CLV88_12311 | Not Available | Negative | 4391052 - 4391705 | 25398.7 |
| putative dna-binding transcriptional regulator yafy | CLV88_12312 | Not Available | Positive | 4391788 - 4392765 | 36754.5 |
| dna repair exonuclease sbccd nuclease subunit | CLV88_12313 | Not Available | Positive | 4392911 - 4394038 | 40960.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
