Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate synthase (nadph) large subunit | CLV88_12249 | Not Available | Negative | 4364421 - 4368959 | 163846.0 |
| glutamate synthase (nadph) small subunit | CLV88_12250 | Not Available | Negative | 4369114 - 4370547 | 51691.1 |
| undecaprenyl-diphosphatase | CLV88_12251 | Not Available | Positive | 4370768 - 4371571 | 28408.7 |
| nadh dehydrogenase | CLV88_12252 | Not Available | Negative | 4371612 - 4372592 | 35613.1 |
| peptide/nickel transport system atp-binding protein | CLV88_12253 | Not Available | Negative | 4373025 - 4374620 | 58865.0 |
| peptide/nickel transport system permease protein | CLV88_12254 | Not Available | Negative | 4374610 - 4375530 | 33340.3 |
| peptide/nickel transport system permease protein | CLV88_12255 | Not Available | Negative | 4375527 - 4376576 | 37606.8 |
| hypothetical protein | CLV88_1231 | Not Available | Positive | 4377021 - 4377257 | 8892.63 |
| hypothetical protein | CLV88_1232 | Not Available | Positive | 4377351 - 4377590 | 8922.64 |
| uncharacterized protein duf559 | CLV88_1233 | Not Available | Positive | 4377797 - 4380952 | 114741.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
