Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trimethylamine--corrinoid protein co-methyltransferase | CLV88_12239 | Not Available | Positive | 4352934 - 4354451 | 55364.1 |
| dimethylglycine dehydrogenase | CLV88_12240 | Not Available | Positive | 4354522 - 4356990 | 90968.6 |
| arac family transcriptional regulator with amidase-like domain | CLV88_12241 | Not Available | Positive | 4357001 - 4358035 | 37884.1 |
| peptide-methionine (r)-s-oxide reductase | CLV88_12242 | Not Available | Positive | 4358112 - 4358561 | 16510.1 |
| peptide-methionine (s)-s-oxide reductase | CLV88_12243 | Not Available | Positive | 4358558 - 4359064 | 18965.9 |
| n-methylhydantoinase a/oxoprolinase/acetone carboxylase beta subunit | CLV88_12244 | Not Available | Negative | 4359215 - 4361242 | 71218.5 |
| epoxyqueuosine reductase | CLV88_12245 | Not Available | Negative | 4361292 - 4362344 | 38964.2 |
| glutathione s-transferase | CLV88_12246 | Not Available | Negative | 4362428 - 4363093 | 25525.6 |
| monofunctional biosynthetic peptidoglycan transglycosylase | CLV88_12247 | Not Available | Negative | 4363150 - 4363893 | 28098.3 |
| uncharacterized protein duf4189 | CLV88_12248 | Not Available | Negative | 4363937 - 4364302 | 12843.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
