Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_12228 | Not Available | Negative | 4343134 - 4343448 | 10478.5 |
| uncharacterized protein yndb with ahsa1/start domain | CLV88_12229 | Not Available | Negative | 4343462 - 4343899 | 16246.8 |
| arsr family transcriptional regulator | CLV88_12230 | Not Available | Negative | 4343896 - 4344216 | 11716.9 |
| phosphoserine phosphatase | CLV88_12231 | Not Available | Negative | 4344406 - 4345281 | 30915.1 |
| phosphoserine aminotransferase | CLV88_12233 | Not Available | Positive | 4345439 - 4346584 | 40993.7 |
| d-3-phosphoglycerate dehydrogenase | CLV88_12234 | Not Available | Positive | 4346680 - 4348275 | 56365.1 |
| serine/threonine protein phosphatase 1 | CLV88_12235 | Not Available | Positive | 4348396 - 4349127 | 27456.7 |
| malonyl-coa/methylmalonyl-coa synthetase | CLV88_12236 | Not Available | Negative | 4349373 - 4350893 | 54531.4 |
| eama domain-containing membrane protein rard | CLV88_12237 | Not Available | Positive | 4351015 - 4351938 | 32841.4 |
| transcriptional regulator | CLV88_12238 | Not Available | Negative | 4351922 - 4352839 | 34576.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
