Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_12218 | Not Available | Negative | 4334015 - 4334377 | 13145.4 |
| hint domain-containing protein | CLV88_12219 | Not Available | Positive | 4334578 - 4336161 | 55791.5 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | CLV88_12220 | Not Available | Negative | 4336218 - 4337045 | 29613.2 |
| hypothetical protein | CLV88_12221 | Not Available | Positive | 4337224 - 4338057 | 31072.0 |
| hypothetical protein | CLV88_12222 | Not Available | Negative | 4338107 - 4338316 | 7447.08 |
| superfamily iv 4 tms phage holin | CLV88_12223 | Not Available | Negative | 4338420 - 4338803 | 13237.3 |
| 23s rrna m(2)a-2503 methyltransferase | CLV88_12224 | Not Available | Negative | 4338878 - 4340071 | 44166.1 |
| hint domain-containing protein | CLV88_12225 | Not Available | Negative | 4340159 - 4341166 | 36675.2 |
| hypothetical protein | CLV88_12226 | Not Available | Negative | 4341283 - 4341816 | 18667.0 |
| asparaginase | CLV88_12227 | Not Available | Positive | 4341982 - 4342977 | 35165.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
