Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative spermidine/putrescine transport system permease protein | CLV88_1228 | Not Available | Positive | 4322232 - 4323443 | 43933.0 |
| l,d-transpeptidase-like protein | CLV88_1229 | Not Available | Positive | 4323590 - 4324150 | 20881.1 |
| lytic murein transglycosylase | CLV88_12210 | Not Available | Negative | 4324155 - 4325414 | 45738.0 |
| hth domain-containing protein | CLV88_12211 | Not Available | Negative | 4325501 - 4326199 | 25962.5 |
| glutathione s-transferase | CLV88_12212 | Not Available | Positive | 4326279 - 4327028 | 27175.9 |
| rnase r | CLV88_12213 | Not Available | Negative | 4326997 - 4329252 | 82651.4 |
| hypothetical protein | CLV88_12214 | Not Available | Negative | 4329284 - 4329880 | 22100.9 |
| succinyldiaminopimelate desuccinylase | CLV88_12215 | Not Available | Negative | 4329864 - 4331009 | 40533.0 |
| hint domain-containing protein | CLV88_12216 | Not Available | Positive | 4331319 - 4332878 | 55230.9 |
| hint domain-containing protein | CLV88_12217 | Not Available | Positive | 4332915 - 4334012 | 39959.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
