Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_12157 | Not Available | Negative | 4313331 - 4313555 | 8008.62 |
| hypothetical protein | CLV88_12158 | Not Available | Negative | 4313688 - 4313924 | 8928.89 |
| hypothetical protein | CLV88_12159 | Not Available | Negative | 4314140 - 4314607 | 16825.8 |
| flgd-like protein | CLV88_1221 | Not Available | Positive | 4314640 - 4315043 | 14211.4 |
| thiamine kinase-like enzyme | CLV88_1222 | Not Available | Positive | 4315191 - 4316063 | 32391.6 |
| gntr family transcriptional regulator | CLV88_1223 | Not Available | Positive | 4316189 - 4316875 | 25158.2 |
| putrescine aminotransferase | CLV88_1224 | Not Available | Positive | 4316968 - 4318356 | 50077.1 |
| putative spermidine/putrescine transport system atp-binding protein | CLV88_1225 | Not Available | Positive | 4318550 - 4319680 | 42016.5 |
| putative spermidine/putrescine transport system substrate-binding protein | CLV88_1226 | Not Available | Positive | 4319768 - 4320856 | 39537.4 |
| putative spermidine/putrescine transport system permease protein | CLV88_1227 | Not Available | Positive | 4320952 - 4322226 | 46999.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
