Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| choline-glycine betaine transporter | CLV88_12147 | Not Available | Negative | 4305181 - 4307001 | 64397.4 |
| site-specific recombinase xerd | CLV88_12148 | Not Available | Positive | 4307458 - 4308576 | 42772.1 |
| hypothetical protein | CLV88_12149 | Not Available | Positive | 4309133 - 4309390 | 9550.67 |
| hypothetical protein | CLV88_12150 | Not Available | Negative | 4309311 - 4309823 | 18172.9 |
| transposase | CLV88_12151 | Not Available | Negative | 4309820 - 4310056 | 8997.79 |
| integrase-like protein | CLV88_12152 | Not Available | Positive | 4310119 - 4310685 | 21534.5 |
| arac family transcriptional regulator | CLV88_12153 | Not Available | Negative | 4310926 - 4311927 | 37632.1 |
| hypothetical protein | CLV88_12154 | Not Available | Positive | 4311987 - 4312256 | 9844.05 |
| methyltransferase family protein | CLV88_12155 | Not Available | Negative | 4312227 - 4313024 | 30404.7 |
| hypothetical protein | CLV88_12156 | Not Available | Positive | 4313041 - 4313325 | 10551.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
