Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heat shock protein hsp15 | CLV88_12127 | Not Available | Positive | 4286818 - 4287195 | 14067.0 |
| ferredoxin | CLV88_12128 | Not Available | Positive | 4287244 - 4287582 | 12724.8 |
| card family transcriptional regulator | CLV88_12129 | Not Available | Positive | 4287887 - 4288405 | 19124.8 |
| voltage-gated potassium channel | CLV88_12130 | Not Available | Positive | 4288498 - 4289298 | 29761.9 |
| cobalamin-5'-phosphate synthase | CLV88_12131 | Not Available | Negative | 4289295 - 4290050 | 25742.7 |
| nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase | CLV88_12132 | Not Available | Positive | 4290133 - 4291143 | 34180.6 |
| kef-type potassium/proton antiporter (cpa2 family) | CLV88_12133 | Not Available | Negative | 4291140 - 4293023 | 68344.5 |
| asnc family transcriptional regulator | CLV88_12134 | Not Available | Negative | 4293045 - 4293599 | 20667.9 |
| 4-hydroxyphenylpyruvate dioxygenase | CLV88_12135 | Not Available | Positive | 4293654 - 4294751 | 41076.2 |
| hypothetical protein | CLV88_12136 | Not Available | Negative | 4294895 - 4297312 | 85721.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
